Skip to content
@waldronlab

Waldron Lab at the CUNY SPH

Software and educational materials from the Waldron lab for computational biostatistics at the CUNY SPH in New York City

Pinned Loading

  1. MultiAssayExperiment MultiAssayExperiment Public

    Bioconductor package for management of multi-assay data

    R 73 34

  2. curatedMetagenomicData curatedMetagenomicData Public

    Curated Metagenomic Data of the Human Microbiome

    R 151 31

  3. curatedTCGAData curatedTCGAData Public

    Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

    R 44 9

  4. cBioPortalData cBioPortalData Public

    Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

    R 34 13

  5. presentations presentations Public

    A repository for public presentations

    TeX 6 9

  6. BugSigDB BugSigDB Public

    A microbial signatures database

    PHP 8 8

Repositories

Showing 10 of 116 repositories
  • BugSigDBExports Public

    BugSigDB data files

    waldronlab/BugSigDBExports’s past year of commit activity
    R 3 4 5 1 Updated Mar 22, 2026
  • czieoss6-biocgpu Public

    Website tracking repositories related to czieoss6-biocgpu

    waldronlab/czieoss6-biocgpu’s past year of commit activity
    0 0 0 0 Updated Mar 21, 2026
  • config Public

    A repository for common configuration scripts

    waldronlab/config’s past year of commit activity
    Shell 0 0 0 0 Updated Mar 20, 2026
  • imageTCGAutils Public

    Misc. scripts for handling cancerdatasci data

    waldronlab/imageTCGAutils’s past year of commit activity
    R 0 1 0 0 Updated Mar 20, 2026
  • imageFeatureTCGA Public
    waldronlab/imageFeatureTCGA’s past year of commit activity
    R 1 1 8 (1 issue needs help) 0 Updated Mar 19, 2026
  • bioanalyzer-backend Public

    Streamline BugSigDB curation with AI-powered scientific paper analysis. Automatically extracts essential microbiome study metadata from research papers, reducing manual curation time and improving data quality for the BugSigDB database.

    waldronlab/bioanalyzer-backend’s past year of commit activity
    Python 0 0 18 1 Updated Mar 19, 2026
  • curator-desk Public

    Curator dashboard for reviewing BioAnalyzer predictions — sortable table, field-level feedback, submit via GitHub Issues

    waldronlab/curator-desk’s past year of commit activity
    R 0 0 3 1 Updated Mar 18, 2026
  • curatedMetagenomicDataCuration Public

    Sample Metadata Curation for curatedMetagenomicData

    waldronlab/curatedMetagenomicDataCuration’s past year of commit activity
    R 30 25 20 (2 issues need help) 1 Updated Mar 18, 2026
  • BugSigDB Public

    A microbial signatures database

    waldronlab/BugSigDB’s past year of commit activity
    PHP 8 8 16 5 Updated Mar 18, 2026
  • bugphyzzExports Public
    waldronlab/bugphyzzExports’s past year of commit activity
    R 1 1 3 0 Updated Mar 15, 2026
View all repositories

Top languages

Loading…

Most used topics

Loading…