A retrieval-augmented generation (RAG) system for exploring bioinformatics software via natural language, using metadata from bio.tools and a local LLM
A set of utilities to help students with biological calculations. Offline capabilities included.
BioTools is a repository that has many scripts which can be utilized to solve biological problems.
EDAMannot is a command-line toolbox which applies to annotations related to the EDAM ontology.
Contains scripts to study the impact of publishing software to package management systems on their scholarly recognition.
BioTools Agent - 生物信息学工具自动分析系统。基于 Claude Agent SDK 的 GitHub 仓库深度分析工具，支持安全扫描、架构分析和多格式报告生成。
Assessing bioinformatics software annotations: bio.tools case-study
mRNA Molecular Weight Calculator
Ground truth dataset of bioinformatics software, including 45 analyzed tools. The annotations are compared with those in bio.tools using the EDAM ontology. The dataset covers seven scientific fields: metagenomics, neuroimaging, phylogenetics, single-cell biology, systems biology, genetic variants, and microscopy.
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