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Pull requests: nf-core/modules

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Pull requests list

strdust topics and version bump
#10985 opened Mar 20, 2026 by fellen31 • Draft
17 tasks
methbat profile topics and version bump
#10984 opened Mar 20, 2026 by fellen31 • Draft
17 tasks
pbcpgtools topics
#10983 opened Mar 20, 2026 by fellen31 Loading…
17 tasks
longphase topics and version bump
#10982 opened Mar 20, 2026 by fellen31 Loading…
17 tasks
Sawfish topics
#10981 opened Mar 20, 2026 by fellen31 Loading…
17 tasks
Sniffles topics (and version bump)
#10980 opened Mar 20, 2026 by fellen31 Loading…
17 tasks
Severus topics
#10979 opened Mar 20, 2026 by fellen31 Loading…
17 tasks
Fix mass accuracy params in ASSEMBLEEMPIRICALLIBRARY size/s size/xs
#10976 opened Mar 20, 2026 by an-altosian Loading…
2 of 3 tasks
2
Clair3 version topics migration hackathon2026 Ready for Review update module
#10975 opened Mar 19, 2026 by EfraMP Loading…
10 of 17 tasks
1
2
Markdup uses RX tags and creates indices
#10974 opened Mar 19, 2026 by bwlang Loading…
5 of 17 tasks
Add topic channel for version output in variantextractor
#10971 opened Mar 19, 2026 by sbreuch Loading…
3 tasks done
2
port dedup to topics Ready for Review
#10969 opened Mar 19, 2026 by famosab Loading…
17 tasks
1
4
Topics conversion, allow for SNV and SV co-phasing with multiple samples in HiPhase
#10964 opened Mar 19, 2026 by fellen31 Loading…
17 tasks
Add LDAK module family
#10961 opened Mar 19, 2026 by lyh970817 Loading…
14 tasks done
mcstaging/imc2mc topic update Ready for Review
#10959 opened Mar 18, 2026 by kbestak Loading…
9 of 17 tasks
Adopt topic channels in all nf-core modules
1
@kbestak
5
Update module: sparse_signatures Ready for Review
#10949 opened Mar 18, 2026 by valerianilucrezia Loading…
4 tasks done
1
1
plink/gwas: support chromosome metadata and BED phenotype files
#10947 opened Mar 18, 2026 by lyh970817 Loading…
14 tasks done
4
New module for KnotAnnotSV
#10932 opened Mar 17, 2026 by tetedange13 • Draft
7 of 14 tasks
5
fastavalidator topics migration
#10925 opened Mar 16, 2026 by EfraMP Loading…
6 of 17 tasks
1
Add new module: disambiguate Ready for Review
#10917 opened Mar 16, 2026 by ctuni Loading…
11 of 17 tasks
1
12
Add HDL h2 and rg modules
#10912 opened Mar 15, 2026 by lyh970817 • Draft
14 tasks done
Migration to topics channels: diamond/blastp #10766
#10885 opened Mar 13, 2026 by LorenzoCampanelli1102 Loading…
16 tasks
1
8
Bamclipper topics migration
#10882 opened Mar 13, 2026 by santiagotariza Loading…
1
1
topic migration for deseq2 size/s
#10873 opened Mar 13, 2026 by lourdeslabrador Loading…
17 tasks
1
10
Migrate drep/compare module to topic channels
#10869 opened Mar 13, 2026 by ayirm • Draft
3 of 8 tasks
1
ProTip! What’s not been updated in a month: updated:<2026-02-20.