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1. SQuAPP SQuAPP Public

   Shiny App allows streamlined analysis of multiple levels of proteomics data.

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2. RoLiM RoLiM Public

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3. ProteoForge_Analysis ProteoForge_Analysis Public

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5. Library-Filtering Library-Filtering Public

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6. Analysis_of_QuEStVar_Manuscript Analysis_of_QuEStVar_Manuscript Public

   All the scripts and notebooks used to produce the data written in the manuscript titled "Statistical testing for protein equivalence identifies core functional modules conserved across 360 cancer c…

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