Skip to content
@BirolLab

Birol Lab

Bioinformatics Technology Lab

Popular repositories Loading

  1. abyss abyss Public

    🔬 Assemble large genomes using short reads

    C++ 328 111

  2. NanoSim NanoSim Public

    Nanopore sequence read simulator

    Python 292 64

  3. straglr straglr Public

    Tandem repeat expansion detection or genotyping from long-read alignments

    Python 147 14

  4. RNA-Bloom RNA-Bloom Public

    🌺 reference-free transcriptome assembly for short and long reads

    Java 108 9

  5. ntHash ntHash Public

    Fast hash function for DNA/RNA sequences

    C++ 106 15

  6. ntSynt ntSynt Public

    Detecting multi-genome synteny using minimizer graph mapping

    Python 103 2

Repositories

Showing 10 of 87 repositories
  • RAILS Public

    🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling

    BirolLab/RAILS’s past year of commit activity
    Perl 27 GPL-3.0 5 0 0 Updated Mar 10, 2026
  • peekseq Public

    De novo protein-coding potential calculator using a k-mer approach

    BirolLab/peekseq’s past year of commit activity
    Perl 4 GPL-3.0 0 0 0 Updated Mar 10, 2026
  • PASS Public

    Proteome Assembler with Short peptide Sequence

    BirolLab/PASS’s past year of commit activity
    Perl 9 GPL-3.0 2 0 0 Updated Mar 10, 2026
  • ntRoot Public

    🌳 Scalable ancestry from genomic data

    BirolLab/ntRoot’s past year of commit activity
    Python 12 GPL-3.0 0 0 0 Updated Mar 10, 2026
  • SSAKE Public

    🍶 Genome assembly with short sequence reads

    BirolLab/SSAKE’s past year of commit activity
    Perl 25 GPL-2.0 11 1 0 Updated Mar 10, 2026
  • LINKS Public

    ⛓ Long Interval Nucleotide K-mer Scaffolder

    BirolLab/LINKS’s past year of commit activity
    Perl 73 GPL-3.0 16 0 0 Updated Mar 10, 2026
  • ntEdit Public

    ✏️ Genome assembly polishing & SNV detection

    BirolLab/ntEdit’s past year of commit activity
    C++ 73 GPL-3.0 10 0 1 Updated Mar 10, 2026
  • mtGrasp Public

    mtGrasp: de novo reference-grade mitochondrial genome assembly and standardization

    BirolLab/mtGrasp’s past year of commit activity
    Python 24 GPL-3.0 2 2 0 Updated Mar 10, 2026
  • unikseq Public

    🧬 Unique (& conserved) DNA sequence identification

    BirolLab/unikseq’s past year of commit activity
    Perl 15 GPL-3.0 1 0 0 Updated Mar 10, 2026
  • transabyss Public

    de novo assembly of RNA-seq data using ABySS

    BirolLab/transabyss’s past year of commit activity
    Python 34 14 4 0 Updated Mar 10, 2026
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…