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Allow for more customization/separation for mcp configuration #1955

@fknutsonblizz

Description

@fknutsonblizz

Describe the feature or problem you'd like to solve

When a project has .vscode/mcp.json, it will override ~/.copilot/mcp-config.json even when they are set differently due to being run within VSCode and cli

Proposed solution

It would be useful to have either a flag in the config to determine that CLI should ignore/prioritize one over the other for CLI, or to be able to turn off reading from the mcp.json within .vscode.

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